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Abdelkrim J., Aznar-cormano L., Fedosov A.E., Kantor Y.I., Lozouet P., Phuong M.A., Zaharias P. & Puillandre N. 2018. Exon-Capture-Based Phylogeny and Diversification of the Venomous Gastropods (Neogastropoda, Conoidea), in Vidal N.(Ed.), Molecular Biology and Evolution 35(10): 2355-2374. DOI:10.1093/molbev/msy144
Résumé [+]
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Transcriptome-based exon capture methods provide an approach to recover several hundred markers from genomic DNA, allowing for robust phylogenetic estimation at deep timescales. We applied this method to a highly diverse group of venomous marine snails, Conoidea, for which published phylogenetic trees remain mostly unresolved for the deeper nodes. We targeted 850 protein coding genes (678,322 bp) in ca. 120 samples, spanning all (except one) known families of Conoidea and a broad selection of non-Conoidea neogastropods. The capture was successful for most samples, although capture efficiency decreased when DNA libraries were of insufficient quality and/or quantity (dried samples or low starting DNA concentration) and when targeting the most divergent lineages. An average of 75.4% of proteins was recovered, and the resulting tree, reconstructed using both supermatrix (IQ-tree) and supertree (Astral-II, combined with the Weighted Statistical Binning method) approaches, are almost fully supported. A reconstructed fossil-calibrated tree dates the origin of Conoidea to the Lower Cretaceous. We provide descriptions for two new families. The phylogeny revealed in this study provides a robust framework to reinterpret changes in Conoidea anatomy through time. Finally, we used the phylogeny to test the impact of the venom gland and radular type on diversification rates. Our analyses revealed that repeated losses of the venom gland had no effect on diversification rates, while families with a breadth of radula types showed increases in diversification rates, thus suggesting that trophic ecology may have an impact on the evolution of Conoidea.
Campagnes accessibles citées (23) [+]
[-]
ATIMO VATAE,
AURORA 2007,
BIOPAPUA,
CEAMARC-AA,
CONCALIS,
Restreint,
DongSha 2014,
EXBODI,
GUYANE 2014,
ILES DU SALUT,
INHACA 2011,
KARUBENTHOS 2012,
KAVIENG 2014,
MAINBAZA,
NORFOLK 2,
NanHai 2014,
PANGLAO 2005,
PAPUA NIUGINI,
Restreint,
SALOMONBOA 3,
TAIWAN 2013,
TERRASSES,
Restreint
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Cunha T.J., Lemer S., Bouchet P., Kano Y. & Giribet G. 2019. Putting keyhole limpets on the map: phylogeny and biogeography of the globally distributed marine family Fissurellidae (Vetigastropoda, Mollusca). Molecular Phylogenetics and Evolution 135: 249-269. DOI:10.1016/j.ympev.2019.02.008
Résumé [+]
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Fissurellidae are marine gastropods with a worldwide distribution and a rich fossil record. We integrate molecular, geographical and fossil data to reconstruct the fissurellid phylogeny, estimate divergence times and investigate historical routes of oceanic dispersal. With five molecular markers for 143 terminals representing 27 genera, we resolve deep nodes and find that many genera (e.g., Emarginula, Diodora, Fissurella) are not monophyletic and need systematic revision. Several genera classified as Emarginulinae are recovered in Zeidorinae. Future work should prioritize emarginuline genera to improve understanding of ancestral traits and the early evolution of fissurellids. Tree calibration with the fossilized birth-death model indicates that crown fissurellids originated around 175 Ma, and generally resulted in younger ages for the earliest nodes than the node dating approach. Model-based biogeographic reconstruction, supported by fossils, infers an Indo-West Pacific origin, with a westward colonization of new oceans via the Tethys Seaway upon the breakup of Pangea. Western Atlantic clades then served as source for dispersal towards other parts of the globe. As the sister group to all other fissurellids, Rimula is ranked in its own subfamily, Rimulinae stat. nov. New synonyms: Hemitominae syn. nov. of Zeidorinae stat. nov.; Cranopsis syn. nov. of Puncturella; Variegemarginula syn. nov. of Montfortula.
Campagnes accessibles citées (14) [+]
[-]
ATIMO VATAE,
AURORA 2007,
CEAMARC-AA,
CONCALIS,
EXBODI,
GUYANE 2014,
INHACA 2011,
KARUBENTHOS 2,
KARUBENTHOS 2012,
PANGLAO 2004,
PANGLAO 2005,
PAPUA NIUGINI,
SALOMON 2,
TARASOC
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Fassio G., Modica M.V., Alvaro M.C., Buge B., Salvi D., Oliverio M. & Schiaparelli S. 2019. An Antarctic flock under the Thorson's rule: Diversity and larval development of Antarctic Velutinidae (Mollusca: Gastropoda). Molecular Phylogenetics and Evolution 132: 1-13. DOI:10.1016/j.ympev.2018.11.017
Résumé [+]
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In most marine gastropods, the duration of the larval phase is a key feature, strongly influencing species distribution and persistence. Antarctic lineages, in agreement with Thorson's rule, generally show a short pelagic developmental phase (or lack it completely), with very few exceptions. Among them is the ascidian-feeding gastropod family Velutinidae, a quite understudied group. Based on a multilocus (COI, 16S, 28S and ITS2) dataset for 182 specimens collected in Antarctica and other regions worldwide, we investigated the actual Antarctic velutinid diversity, inferred their larval development, tested species genetic connectivity and produced a first phylogenetic framework of the family. We identified 15 Antarctic Molecular Operational Taxonomic Units (MOTUs), some of which represented undescribed species, which show two different types of larval shell, indicating different duration of the Pelagic Larval Phase (PLD). Antarctic velutinids stand as an independent lineage, sister to the rest of the family, with extensive hidden diversity likely produced by rapid radiation. Our phylogenetic framework indicates that this Antarctic flock underwent repeated events of pelagic phase shortening, in agreement with Thorson's rule, yielding species with restricted geographic ranges.
Campagnes accessibles citées (5) [+]
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Fassio G., Stefani M., Russini V., Buge B., Bouchet P., Treneman N., Malaquias M.A.E., Schiaparelli S., Modica M.V. & Oliverio M. 2022. Neither slugs nor snails: a molecular reappraisal of the gastropod family Velutinidae. Zoological Journal of the Linnean Society: 1-41. DOI:10.1093/zoolinnean/zlac091
Résumé [+]
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Abstract
The systematics of the marine mollusc family Velutinidae has long been neglected by taxonomists, mainly because their often internal and fragile shells offer no morphological characters. Velutinids are usually undersampled owing to their cryptic mantle coloration on the solitary, social or colonial ascidians on which they feed and lay eggs. In this study, we address the worldwide diversity and phylogeny of Velutinidae based on the largest molecular dataset (313 specimens) to date, accounting for > 50% of the currently accepted genera, coupled with morphological and ecological data. Velutinids emerge as a diverse group, encompassing four independent subfamily-level lineages, two of which are newly described herein: Marseniopsinae subfam. nov. and Hainotinae subfam. nov. High diversity was found at genus and species levels, with two newly described genera (Variolipallium gen. nov. and Pacifica gen. nov.) and ≥ 86 species in the assayed dataset, 58 of which are new to science (67%). Velutinidae show a remarkable morphological plasticity in shell morphology, mantle extension and chromatic patterns. This variability is likely to be the result of different selective forces, including habitat, depth and trophic interactions.
Campagnes accessibles citées (23) [+]
[-]
ATIMO VATAE,
BIOMAGLO,
BIOPAPUA,
CEAMARC-AA,
CORSICABENTHOS 1,
CORSICABENTHOS 2,
CORSICABENTHOS 3,
GUYANE 2014,
ILES DU SALUT,
KANACONO,
KANADEEP 2,
KARUBENTHOS 2,
KAVIENG 2014,
KOUMAC 2.1,
KOUMAC 2.3,
MADEEP,
MADIBENTHOS,
PANGLAO 2004,
PAPUA NIUGINI,
SAKIZAYA 2019,
SANTO 2006,
Tuhaa Pae 2013,
ZhongSha 2015
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Kantor Y., Fedosov A. & Puillandre N. 2018. New and unusual deep-water Conoidea revised with shell, radula and DNA characters. Ruthenica 28(2): 47-82
Résumé [+]
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In the course of preparation of a new molecular phylogeny of Conoidea based on exon-capture some new species and species with notable morphology were revealed. The taxonomy of these species is discussed and the radula of most of them illustrated for the first time. New genera are described: Comispira gen. nov. (Cochlespiridae), type species Leucosyrinx mai Li et Li, 2008; Pagodaturris gen. nov. (Clavatulidae), type species Pleurotoma molengraaffi Tesch, 1915. New species described: Comispira compta gen. et sp. nov., Sibogasyrinx sangeri sp. nov. (both Cochlespiridae), Pagodaturris philippinensis gen. et sp. nov. (Clavatulidae), Horaiclavus micans sp. nov., Iwaoa invenusta sp. nov. (both Horaiclavidae), Lucerapex cracens sp. nov., Lucerapex laevicarinatus sp. nov. (Turridae), Heteroturris kanacospira sp. nov. (Borsoniidae). Epideira Hedley, 1918 is reallocated from
Pseudomelatomidae to Horaiclavidae. The radulae of Kuroshioturris nipponica (Shuto, 1961) (Turridae), Leucosyrinx verrillii (Dall, 1881), and Leucosyrinx luzonica (Powell, 1969) comb. nov. are illustrated for the first time.
Campagnes accessibles citées (19) [+]
[-]
AURORA 2007,
BIOPAPUA,
CEAMARC-AA,
CONCALIS,
DongSha 2014,
EBISCO,
EXBODI,
GUYANE 2014,
INHACA 2011,
KARUBENTHOS 2,
MADEEP,
NanHai 2014,
PANGLAO 2004,
PANGLAO 2005,
PAPUA NIUGINI,
SALOMON 2,
SALOMONBOA 3,
SANTO 2006,
ZhongSha 2015
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Kantor Y.I., Fedosov A.E., Kosyan A.R., Puillandre N., Sorokin P.A., Kano Y., Clark R. & Bouchet P. 2022. Molecular phylogeny and revised classification of the Buccinoidea (Neogastropoda). Zoological Journal of the Linnean Society 194(3): 789-857. DOI:10.1093/zoolinnean/zlab031
Résumé [+]
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Abstract
The superfamily Buccinoidea is distributed across the oceans of the world from the Arctic Ocean to the Antarctic and from intertidal to abyssal depths. It encompasses 3351 recent species in 337 genera. The latest taxonomic account recognized eight full families. For the first time, the monophyly of the superfamily and the relationships among the families are tested with molecular data supplemented by anatomical and radula data. Five genetic markers were used: fragments of mitochondrial COI, 16S rRNA, 12S rRNA and nuclear Histone 3 (H3) and 28S rRNA genes (for 225 species of 117 genera). Our analysis recovered Buccinoidea monophyletic in Bayesian analyses. The relationships between the formerly recognized families and subfamilies are drastically revised and a new classification of the superfamily is here proposed, now including 20 taxa of family rank and 23 subfamilies. Five new families (Chauvetiidae, Dolicholatiridae, Eosiphonidae, Prodotiidae and Retimohniidae) and one subfamily of Nassariidae (Tomliniinae) are described. Austrosiphonidae and Tudiclidae are resurrected from synonymy and employed in a new taxonomical extension. All but 40 recent genera are reclassified. Our results demonstrate that anatomy is rather uniform within the superfamily. With exceptions, the rather uniform radular morphology alone does not allow the allocation of genera to a particular family without additional molecular data.
Campagnes accessibles citées (42) [+]
[-]
ATIMO VATAE,
AURORA 2007,
BIOPAPUA,
BOA1,
CEAMARC-AA,
CHALCAL 2,
CONCALIS,
CORSICABENTHOS 1,
Restreint,
Restreint,
DongSha 2014,
EBISCO,
GUYANE 2014,
ILES DU SALUT,
INHACA 2011,
KANACONO,
KARUBENTHOS 2,
KARUBENTHOS 2012,
KAVALAN 2018,
KOUMAC 2.1,
KOUMAC 2.3,
MADIBENTHOS,
MAINBAZA,
MIRIKY,
MUSORSTOM 4,
Restreint,
NORFOLK 2,
NanHai 2014,
PANGLAO 2004,
PANGLAO 2005,
PAPUA NIUGINI,
Restreint,
SALOMON 2,
SALOMONBOA 3,
SANTO 2006,
TAIWAN 2000,
TAIWAN 2004,
TARASOC,
TERRASSES,
Tuhaa Pae 2013,
Restreint,
ZhongSha 2015