21 stations/collectes
NanHai 2014
Programme
Informations générales
Chef de mission
Date et lieu de départ
Mon Dec 30 00:00:00 CET 2013Date et lieu d'arrivée
Sun Jan 12 00:00:00 CET 2014Navire : Ocean Researcher 5
Objectifs :
Travaux effectués :
Remerciements :
Bibliographie (13) [+] [-]
Exporter les bibliographies
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Abdelkrim J., Aznar-cormano L., Fedosov A.E., Kantor Y.I., Lozouet P., Phuong M.A., Zaharias P. & Puillandre N. 2018. Exon-Capture-Based Phylogeny and Diversification of the Venomous Gastropods (Neogastropoda, Conoidea), in Vidal N.(Ed.), Molecular Biology and Evolution 35(10): 2355-2374. DOI:10.1093/molbev/msy144
Résumé [+] [-]Transcriptome-based exon capture methods provide an approach to recover several hundred markers from genomic DNA, allowing for robust phylogenetic estimation at deep timescales. We applied this method to a highly diverse group of venomous marine snails, Conoidea, for which published phylogenetic trees remain mostly unresolved for the deeper nodes. We targeted 850 protein coding genes (678,322 bp) in ca. 120 samples, spanning all (except one) known families of Conoidea and a broad selection of non-Conoidea neogastropods. The capture was successful for most samples, although capture efficiency decreased when DNA libraries were of insufficient quality and/or quantity (dried samples or low starting DNA concentration) and when targeting the most divergent lineages. An average of 75.4% of proteins was recovered, and the resulting tree, reconstructed using both supermatrix (IQ-tree) and supertree (Astral-II, combined with the Weighted Statistical Binning method) approaches, are almost fully supported. A reconstructed fossil-calibrated tree dates the origin of Conoidea to the Lower Cretaceous. We provide descriptions for two new families. The phylogeny revealed in this study provides a robust framework to reinterpret changes in Conoidea anatomy through time. Finally, we used the phylogeny to test the impact of the venom gland and radular type on diversification rates. Our analyses revealed that repeated losses of the venom gland had no effect on diversification rates, while families with a breadth of radula types showed increases in diversification rates, thus suggesting that trophic ecology may have an impact on the evolution of Conoidea.
Campagnes accessibles citées (23) [+] [-]ATIMO VATAE, AURORA 2007, BIOPAPUA, CEAMARC-AA, CONCALIS, Restreint, DongSha 2014, EXBODI, GUYANE 2014, ILES DU SALUT, INHACA 2011, KARUBENTHOS 2012, KAVIENG 2014, MAINBAZA, NORFOLK 2, NanHai 2014, PANGLAO 2005, PAPUA NIUGINI, Restreint, SALOMONBOA 3, TAIWAN 2013, TERRASSES, Restreint
Codes des collections associés: IM (Mollusques) -
Ahyong S.T. & Ng P.K. 2017. East Asian Cymonomid Crabs (Crustacea: Brachyura). Zoological Studies 56(24): 1-20. DOI:10.6620/ZS.2017.56-24
Résumé [+] [-]Cymonomid crabs are small cryptic deep-water brachyurans occurring worldwide. Six species have been reported from East Asia: one from both Taiwan and Japan (C. andamanicus Alcock, 1905) and five from Japan only (C. curvirostris Sakai, 1965, C. japonicus Balss, 1922, C. sagamiensis Sakai, 1983, C. soela Ahyong and Brown, 2003, C. umitakae Takeda, 1981). Cymonomus curvirostris, C. japonicus, C. sagamiensis and C. umitakae were described from Japanese waters, but C. andamanicus and C. soela have much more distant type localities - the Andaman Sea and southeastern Australia, respectively. We review all previous records of Cymonomus from East Asia, describe two new species, and clarify the status of records of C. andamanicus and C. soela from the region. Records of C. andamanicus and C. soela from East Asia are referable to two new species occurring in both Taiwan and Japan. The identities of C. japonicus and C. sagamiensis are fixed by neotype selection; C. sagamiensis is made a junior objective synonym of C. umitakae. Six species of Cymonomus are now recorded from Japan, of which two also occur off Taiwan. We also report on cymonomids collected by Taiwanese research vessels in the South China Sea (Dongsha and Macclesfield Bank) of which four species were collected, including C. hakuhoae Takeda and Moosa, 1990, not previously found in Japan or Taiwan. A key to the species of Cymonomus from East Asia and the South China Sea is included.
Campagnes accessibles citées (8) [+] [-]AURORA 2007, DongSha 2014, NanHai 2014, PANGLAO 2005, TAIWAN 2000, TAIWAN 2001, TAIWAN 2003, ZhongSha 2015
Codes des collections associés: IU (Crustacés) -
Chen J.N., Samadi S. & Chen W.J. 2018. Rhodopsin gene evolution in early teleost fishes. PLOS ONE 13(11): e0206918. DOI:10.1371/journal.pone.0206918
Résumé [+] [-]Rhodopsin mediates an essential step in image capture and is tightly associated with visual adaptations of aquatic organisms, especially species that live in dim light environments (e.g., the deep sea). The rh1 gene encoding rhodopsin was formerly considered a singlecopy gene in genomes of vertebrates, but increasing exceptional cases have been found in teleost fish species. The main objective of this study was to determine to what extent the visual adaptation of teleosts might have been shaped by the duplication and loss of rh1 genes. For that purpose, homologous rh1/rh1-like sequences in genomes of ray-finned fishes from a wide taxonomic range were explored using a PCR-based method, data mining of public genetic/genomic databases, and subsequent phylogenomic analyses of the retrieved sequences. We show that a second copy of the fish-specific intron-less rh1 is present in the genomes of most anguillids (Elopomorpha), Hiodon alosoides (Osteoglossomorpha), and several clupeocephalan lineages. The phylogenetic analysis and comparisons of alternative scenarios for putative events of gene duplication and loss suggested that fish rh1 was likely duplicated twice during the early evolutionary history of teleosts, with one event coinciding with the hypothesized fish-specific genome duplication and the other in the common ancestor of the Clupeocephala. After these gene duplication events, duplicated genes were maintained in several teleost lineages, whereas some were secondarily lost in specific lineages. Alternative evolutionary schemes of rh1 and comparison with previous studies of gene evolution are also reviewed.
Campagnes accessibles citées (5) [+] [-]
Codes des collections associés: IC (Ichtyologie) -
Dijkstra H.H. & Maestrati P. 2017. New species and new records of littoral and bathyal living Pectinoidea (Bivalvia: Propeamussiidae, Cyclochlamydidae, Pectinidae) from the western and southwestern Pacific. Zoosystema 39(4): 473-485. DOI:10.5252/z2017n4a3
Campagnes accessibles citées (13) [+] [-]BIOCAL, BIOPAPUA, BORDAU 1, DongSha 2014, GEMINI, KARUBAR, KAVIENG 2014, MADEEP, MUSORSTOM 5, NanHai 2014, PAPUA NIUGINI, TAIWAN 2013, ZhongSha 2015
Codes des collections associés: IM (Mollusques) -
Fedesov A.E., Puillandre N., Herrmann M., Dgebuadze P. & Bouchet P. 2017. Phylogeny, systematics, and evolution of the family Costellariidae (Gastropoda: Neogastropoda). Zoological Journal of the Linnean Society 179(3): 541-626. DOI:10.1111/zoj.12431
Résumé [+] [-]The neogastropod family Costellariidae is a large and successful group of carnivorous marine mollusks that encompasses about 475 living species. Costellariids are most diverse in the tropical Indo-Pacific at a depth interval of 0–200 m, where they are largely represented by numerous species commonly assigned to the genus Vexillum. The present work expands the taxon sampling of a previous phylogeny of the mitriform gastropods to resolve earlier problematic relationships, and thus establish a robust framework of the family, revise its taxonomy, and uncover major trends in the evolution of costellariid morphology. A multicuspidate rachidian is shown to have appeared at least twice in the evolutionary history of the family: it is regarded as an apomorphy of the primarily Indo-Pacific Vexillum–Austromitra–Atlantilux lineage, and has evolved independently in the Nodicostellaria–Mitromica lineage of the western hemisphere. The genera Ceratoxancus and Latiromitra are transferred from the Ptychatractidae to the Costellariidae. Tosapusia, Protoelongata, and Pusia are ranked as full genera, the latter with the three subgenera Pusia, Ebenomitra, and Vexillena. Vexillum (Costellaria) and Zierliana are treated as synonyms of Vexillum. The replacement name Suluspira is proposed for Visaya Poppe, Guillot de Suduiraut & Tagaro, 2006, non Ahyong, 2004 (Crustacea). We introduce four new genera, Alisimitra, Costapex, Turriplicifer, and Orphanopusia, and characterize their anatomy; 14 new species, mostly from deep water in the Indo-Pacific, are described in the genera Tosapusia, Alisimitra, Costapex, and Pusia. At least two species of Costapex gen. nov. have been collected from sunken wood.
Campagnes accessibles citées (23) [+] [-]ATIMO VATAE, AURORA 2007, BIOPAPUA, BOA1, CONCALIS, EBISCO, EXBODI, KARUBENTHOS 2012, KAVIENG 2014, MAINBAZA, MIRIKY, NORFOLK 2, NanHai 2014, PANGLAO 2004, PANGLAO 2005, PAPUA NIUGINI, SALOMON 2, SALOMONBOA 3, SANTO 2006, TARASOC, TERRASSES, Tuhaa Pae 2013, Restreint
Codes des collections associés: IM (Mollusques) -
Kantor Y.I., Horro J., Rolán E. & Puillandre N. 2018. Paraclavatula (Gastropoda: Conoidea: Clavatulidae), a new genus with a distinctive radula type from West Africa. Journal of Molluscan Studies 84(3): 275-284. DOI:10.1093/mollus/eyy012
Résumé [+] [-]A unique radular configuration for Conoidea, consisting of five teeth in a transverse row (acuspate platelike central and laterals, and duplex marginal teeth), was found in three species previously described in the genus Clavatula: C. delphinae, C. pseudomystica and C. christianae. Analysis of the COI gene demonstrated that they belong to the family Clavatulidae. Paraclavatula n. gen. is described. No similar radulae have been found previously among Conoidea and their morphology suggests that the presence of well-defined lateral teeth is more broadly distributed within Conoidea than previously anticipated. Based on radular morphology alone, it would not be possible to attribute the genus to any presently recognized family of Conoidea.
Campagnes accessibles citées (6) [+] [-]
Codes des collections associés: IM (Mollusques) -
Kantor Y.I., Fedosov A.E., Snyder M.A. & Bouchet P. 2018. Pseudolatirus Bellardi, 1884 revisited, with the description of two new genera and five new species (Neogastropoda: Fasciolariidae). European Journal of Taxonomy 433: 1-57. DOI:10.5852/ejt.2018.433
Résumé [+] [-]The genus Pseudolatirus Bellardi, 1884, with the Miocene type species Fusus bilineatus Hörnes, 1853, has been used for 13 Miocene to Early Pleistocene fossil species and eight Recent species and has traditionally been placed in the fasciolariid subfamily Peristerniinae Tryon, 1880. Although the fossil species are apparently peristerniines, the Recent species were in their majority suspected to be most closely related to Granulifusus Kuroda & Habe, 1954 in the subfamily Fusininae Wrigley, 1927. Their close affinity was confirmed by the molecular phylogenetic analysis of Couto et al. (2016). In the molecular phylogenetic section we present a more detailed analysis of the relationships of 10 Recent Pseudolatirus-like species, erect two new fusinine genera, Okutanius gen. nov. (type species Fusolatirus kuroseanus Okutani, 1975) and Vermeijius gen. nov. (type species Pseudolatirus pallidus Kuroda & Habe, 1961). Five species are described as new for science, three of them are based on sequenced specimens (Granulifusus annae sp. nov., G. norfolkensis sp. nov., Okutanius ellenae gen. et sp. nov.) and two (G. tatianae sp. nov., G. guidoi sp. nov.) are attributed to Granulifusus on the basis of conchological similarities to sequenced species. New data on radular morphology is presented for examined species.
Campagnes accessibles citées (20) [+] [-]ATIMO VATAE, AURORA 2007, CONCALIS, DongSha 2014, EBISCO, GUYANE 2014, KANACONO, KARUBENTHOS 2012, KAVIENG 2014, MADEEP, MIRIKY, NanHai 2014, Restreint, PANGLAO 2004, PANGLAO 2005, PAPUA NIUGINI, SALOMON 2, SANTO 2006, TARASOC, TERRASSES
Codes des collections associés: IM (Mollusques) -
Lee B., Richer de forges B. & Corbari L. 2015. Deep-sea spider crabs of the genus Oxypleurodon Miers, 1885 (Decapoda, Brachyura, Majoidea, Epialtidae), from the Nan Hai 2014 Cruise in the South China Sea, with a description of a new species. Crustaceana 88(12-14): 1255-1263. DOI:10.1163/15685403-00003488
Campagnes accessibles citées (1) [+] [-]
Codes des collections associés: IU (Crustacés) -
Lee B.Y., Richer de forges B. & Ng P.K. 2017. Deep-sea spider crabs of the families Epialtidae MacLeay, 1838 and Inachidae MacLeay, 1838, from the South China Sea, with descriptions of two new species (Decapoda, Brachyura, Majoidea). European Journal of Taxonomy 358: 1-37. DOI:10.5852/ejt.2017.358
Campagnes accessibles citées (3) [+] [-]
Codes des collections associés: IU (Crustacés) -
Lemaitre R., Rahayu D.L. & Komai T. 2018. A revision of “blanket-hermit crabs” of the genus Paguropsis Henderson, 1888, with the description of a new genus and five new species (Crustacea, Anomura, Diogenidae). ZooKeys 752: 17-97. DOI:10.3897/zookeys.752.23712
Résumé [+] [-]For 130 years the diogenid genus Paguropsis Henderson, 1888 was considered monotypic for an unusual species, P. typica Henderson, 1888, described from the Philippines and seldom reported since. Although scantly studied, this species is known to live in striking symbiosis with a colonial sea anemone that the hermit can stretch back and forth like a blanket over its cephalic shield and part of cephalothoracic appendages, and thus the common name “blanket-crab”. During a study of paguroid collections obtained during recent French-sponsored biodiversity campaigns in the Indo-West Pacific, numerous specimens assignable to Paguropsis were encountered. Analysis and comparison with types and other historical specimens deposited in various museums revealed the existence of five undescribed species. Discovery of these new species, together with the observation of anatomical characters previously undocumented or poorly described, including coloration, required a revision of the genus Paguropsis. The name Chlaenopagurus andersoni Alcock & McArdle, 1901, considered by Alcock (1905) a junior synonym of P. typica, proved to be a valid species and is resurrected as P. andersoni (Alcock, 1899). In two of the new species, the shape of the gills, length/width of exopod of maxilliped 3, width and shape of sternite XI (of pereopods 3), and armature of the dactyls and fixed fingers of the chelate pereopods 4, were found to be characters so markedly different from P. typica and other species discovered that a new genus for them, Paguropsina gen. n., is justified. As result, the genus Paguropsis is found to contain five species: P. typica, P. andersoni, P. confusa sp. n., P. gigas sp. n., and P. lacinia sp. n. Herein, Paguropsina gen. n., is proposed and diagnosed for two new species, P. pistillata gen. et sp. n., and P. inermis gen. et sp. n.; Paguropsis is redefined, P. typica and its previously believed junior synonym, P. andersoni, are redescribed. All species are illustrated, and color photographs provided. Also included are a summary of the biogeography of the two genera and all species; remarks on the significance of the unusual morphology; and remarks on knowledge of the symbiotic anemones used by the species. To complement the morphological descriptions and assist in future population and phylogenetic investigations, molecular data for mitochondrial COI barcode region and partial sequences of 12S and 16S rRNA are reported. A preliminary phylogenetic analysis using molecular data distinctly shows support for the separation of the species into two clades, one with all five species of Paguropsis, and another with the two species Paguropsina gen. n.
Campagnes accessibles citées (28) [+] [-]BATHUS 3, BIOPAPUA, BORDAU 1, BORDAU 2, CORINDON 2, Restreint, Restreint, EBISCO, KARUBAR, LIFOU 2000, LITHIST, LUMIWAN 2008, MADEEP, MAINBAZA, MIRIKY, MUSORSTOM 1, MUSORSTOM 2, MUSORSTOM 3, MUSORSTOM 5, MUSORSTOM 6, NORFOLK 1, NORFOLK 2, NanHai 2014, PANGLAO 2004, PANGLAO 2005, SALOMON 1, SALOMON 2, ZhongSha 2015
Codes des collections associés: IU (Crustacés) -
Phuong M.A., Alfaro M.E., Mahardika G.N., Marwoto R.M., Prabowo R.E., Von rintelen T., Vogt P.W., Hendricks J.R. & Puillandre N. 2018. Lack of signal for the impact of venom gene diversity on speciation rates in cone snails. bioRxiv 359976. DOI:10.1101/359976
Résumé [+] [-]Understanding why some groups of organisms are more diverse than others is a central goal in macroevolution. Evolvability, or lineages' intrinsic capacity for evolutionary change, is thought to influence disparities in species diversity across taxa. Over macroevolutionary time scales, clades that exhibit high evolvability are expected to have higher speciation rates. Cone snails (family: Conidae, >900 spp.) provide a unique opportunity to test this prediction because their venom genes can be used to characterize differences in evolvability between clades. Cone snails are carnivorous, use prey-specific venom (conotoxins) to capture prey, and the genes that encode venom are known and diversify through gene duplication. Theory predicts that higher gene diversity confers a greater potential to generate novel phenotypes for specialization and adaptation. Therefore, if conotoxin gene diversity gives rise to varying levels of evolvability, conotoxin gene diversity should be coupled with macroevolutionary speciation rates. We applied exon capture techniques to recover phylogenetic markers and conotoxin loci across 314 species, the largest venom discovery effort in a single study. We paired a reconstructed timetree using 12 fossil calibrations with species-specific estimates of conotoxin gene diversity and used trait-dependent diversification methods to test the impact of evolvability on diversification patterns. Surprisingly, did not detect any signal for the relationship between conotoxin gene diversity and speciation rates, suggesting that venom evolution may not be the rate-limiting factor controlling diversification dynamics in Conidae. Comparative analyses showed some signal for the impact of diet and larval dispersal strategy on diversification patterns, though whether or not we detected a signal depended on the dataset and the method. If our results remain true with increased sampling in future studies, they suggest that the rapid evolution of Conidae venom may cause other factors to become more critical to diversification, such as ecological opportunity or traits that promote isolation among lineages.
Campagnes accessibles citées (25) [+] [-]ATIMO VATAE, AURORA 2007, BIOPAPUA, CONCALIS, EBISCO, EXBODI, GUYANE 2014, INHACA 2011, KARUBENTHOS 2012, KARUBENTHOS 2015, KAVIENG 2014, MADEEP, MAINBAZA, MIRIKY, NORFOLK 2, NanHai 2014, Restreint, PANGLAO 2004, PANGLAO 2005, PAPUA NIUGINI, SALOMONBOA 3, SANTO 2006, TAIWAN 2013, TERRASSES, Restreint
Codes des collections associés: IM (Mollusques) -
Tenorio M.J. & Castelin M. 2016. Genus Profundiconus Kuroda, 1956 (Gastropoda, Conoidea): Morphological and molecular studies, with the description of five new species from the Solomon Islands and New Caledonia. European Journal of Taxonomy 173: 1-45. DOI:10.5852/ejt.2016.173
Résumé [+] [-]The genus Profundiconus Kuroda, 1956 is reviewed. The morphological characters of the shell, radular tooth and internal anatomy of species in Profundiconus are discussed. In particular, we studied Profundiconus material collected by dredging in deep water during different scientific campaigns carried out in the Solomon Islands, Madagascar, Papua New Guinea and New Caledonia. We reconstructed a phylogeny of 55 individuals based on partial mitochondrial cox1 gene sequences. The phylogeny shows several clades containing individuals that do not match any of the known species of Profundiconus based on their shell and radular morphologies, and are introduced here as five new species: Profundiconus maribelae sp. nov. from the Solomon Islands; P. virginiae sp. nov. from Chesterfield Plateau (New Caledonia); P. barazeri sp. nov. from Chesterfield Plateau and the Grand Passage area (New Caledonia); P. puillandrei sp. nov. from Norfolk Ridge (New Caledonia), Kermadec Ridge (New Zealand) and possibly Balut Island (Philippines); and P. neocaledonicus sp. nov. from New Caledonia. Furthermore, Profundiconus teramachii forma neotorquatus (da Motta, 1984) is raised to specific status as P. neotorquatus (da Motta, 1984).
Campagnes accessibles citées (19) [+] [-]ATIMO VATAE, BATHUS 3, BIOPAPUA, BORDAU 1, CHALCAL 2, CONCALIS, DongSha 2014, EBISCO, EXBODI, MUSORSTOM 6, NORFOLK 1, NORFOLK 2, NanHai 2014, PANGLAO 2005, SALOMON 2, SALOMONBOA 3, SANTO 2006, SMIB 8, TERRASSES
Codes des collections associés: IM (Mollusques) -
Tongboonkua P., Lee M.Y. & Chen W.J. 2018. A new species of sinistral flatfish of the genus Chascanopsetta (Teleostei: Bothidae) from off Papua New Guinea, western Pacific Ocean. Zootaxa 4476(1): 168. DOI:10.11646/zootaxa.4476.1.16
Résumé [+] [-]Left-eyed flounders of the genus Chascanopsetta Alcock 1894 (Bothidae) occur in the Indian, Pacific, and Atlantic oceans at depths ranging from 120 to 1500 meters. They possess some unique features in bothid fishes including a strongly compressed and elongated body and a tremendously large mouth. Currently, nine species of Chascanopsetta are recognized, and three of them (C. micrognatha Amaoka & Yamamoto 1984, C. lugubris Alcock 1894 and C. prognatha Norman 1939) are distributed in the West Pacific. We collected 25 specimens of Chascanopsetta during 11 biodiversity expeditions carried out mainly in the West Pacific. Among them, eight specimens taken off Papua New Guinea present morphological features that differ from those of the three nominal species known in the West Pacific. In this study, we examined these eight specimens of unknown affinity and compared their morphology to that of specimens of other congeneric species. Results of these comparisons showed that these specimens represent an undescribed species of Chascanopsetta, named herein, C. novaeguineae sp. nov.. The new species resembles C. elski Foroshchuk 1991, which is known only from the Saya de Malha Bank in the western Indian Ocean, in having a high number of gill rakers (> 13). However, the combination of the following characters further distinguishes C. novaeguineae sp. nov. from C. elski: longer jaws, narrower interorbital width, and number of pseudobranches (21–25 vs. 26–27). The DNA sequences from the mitochondrial cytochrome oxidase subunit I (COI) gene from C. novaeguineae sp. nov. and other species were obtained and compared to confirm its taxonomic status and to infer its tentative phylogenetic position within the Chascanopsetta.
Campagnes accessibles citées (11) [+] [-]AURORA 2007, BIOPAPUA, DongSha 2014, KANACONO, KANADEEP, KARUBENTHOS 2015, KAVIENG 2014, MADEEP, NanHai 2014, SALOMONBOA 3, ZhongSha 2015
Codes des collections associés: IC (Ichtyologie)
Liste des documents
- Courriel
- Accès restreint (1)
- Documents post-campagne
- Accès restreint (2)
- Google Earth
- Stations NanHai 2014 - Google Earth
Liste des photos
Liste des participants
Détail :
- Améziane, Nadia (Systématique des échinodermes, Muséum national d'Histoire naturelle)
- Barazer, Jean-François ( Genavir)
- Maître d'équipage
- Chambard, Cyril ( Muséum national d'Histoire naturelle)
- Chang, Su-Ching
- Chen, Chien-Hsun
- Chen, Jhen-Nien (Ichtyologie, National Taiwan University)
- Chen, Wei-jen (Ichtyologiste, National Taiwan University)
- Tue Dec 30 00:00:00 CET 2014 - Sun Jan 12 00:00:00 CET 2014 Chef de mission
- Cheng, Yu-Rong
- Guo, Dao-ren
- Huang, Chung-Sheng
- Jaing, Bing-Rong
- Lee, Hsin (Malacologie, National Taiwan University)
- Lee, Rueil-Ly
- Lo, Pei-Chun
- Qin, Qixiang
- Richer de Forges, Bertrand (Carcinologie - Benthologie, Muséum national d'Histoire naturelle)
- Samuel, Pierre ( Muséum national d'Histoire naturelle)
- Tu, Tzu-Hsuan
- Warén, Anders (Malacologie, Swedish museum of Natural History)
- Yang, Chien-Hui
Cartographie des stations de collectes
Fichier GoogleEarth (.kml) des points de collectes
Liste des stations
Taxons par accès
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